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Stanton, Kelly P; Jin, Jiaqi; Lederman, Roy R; Weissman, Sherman M; Kluger, Yuval

Ritornello: high fidelity control-free chromatin immunoprecipitation peak calling Journal Article

Nucleic Acids Research, 45 (21), pp. e173–e173, 2017, ISSN: 0305-1048, (Publisher: Oxford Academic).

Abstract | Links | BibTeX | Tags: DNA sequencing, Sequencing, Software

Lederman, Roy R

A permutations-based algorithm for fast alignment of long paired-end reads Technical Report

Yale CS (YALEU/DCS/TR-1474), 2013.

BibTeX | Tags: Algorithms, DNA sequencing, Fast algorithms, Randomized algorithms, Sequencing

Lederman, Roy R

A random-permutations-based approach to fast read alignment Journal Article

BMC Bioinformatics, 14 (5), pp. S8, 2013, ISSN: 1471-2105.

Abstract | Links | BibTeX | Tags: Algorithm, DNA sequencing, Fast algorithms, Neighbor Search, Random Permutation, Reference Genome, Reference Library, Search Problem

Lederman, Roy R

Building approximate overlap graphs for DNA assembly using random-permutations-based search Technical Report

Yale CS (YALEU/DCS/TR-1470), 2012.

BibTeX | Tags: DNA sequencing, Sequencing

Lederman, Roy R

Homopolymer Length Filters Technical Report

Yale CS (YALEU/DCS/TR-1465), 2012.

BibTeX | Tags: Algorithms, DNA sequencing, Sequence Alignment, Sequencing